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Flye: Run Long Read Assembler Online

Upload your raw ONT reads (.fasta) to create a de novo assembly for your microbial sample
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De Novo Assembly with Flye

Solu: genomic surveillance in your browser

Ready in Minutes

The tool runs in our optimized high performance cloud, taking usually from seconds to minutes to complete.

Works for Bacteria and Fungi

Solu supports most pathogenic bacterial and fungal organisms.

Easy-to-use Tool

You can use Solu even if you have never analyzed WGS data before thanks to its simple interface.

HIPAA-grade Security

Your uploaded files are protected with the high-level security, so no one can access them except you.

Fully Online

Solu is online which means that you don't need to download anything to your computer or phone.

Supports Short & Long Reads

Solu Platform supports both short- and long-read sequencing data.

How to run Flye for a microbial sample

Looking for an efficient way to perform de novo assembly for your ONT sequenced microbial isolates? Solu Platform provides built-in de novo assembly with Flye and Racon directly in your browser. Upload your raw reads (.fastq or .fastq.gz) and the process starts automatically. You can download the finished assembly in .fasta format.
REQUIREMENTS
Basecalled Oxford Nanopore sequencing data
Inputs
Raw reads (.fastq / .fastq.gz)
Outputs
Assembled genome as contigs (.fasta)

Explore Further Free Tools:

SCCmec

Kleborate

Fungal Species Identification

FastQC

Variant calling

IQ-Tree

MOB-Suite

De Novo Assembly with SPAdes

Quast

Bacterial Species Identification

AMRFinderPlus

MLST

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"Working with Solu has been a joy. The software is intuitive and easy to use, and the team is responsive and proactive."

Prof. Paul Bollyky

Stanford

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