cgMLST: Core Genome Multi-Locus Sequence Typing Online
Upload bacterial isolates and get allelic profiles, allele-difference clustering and a cgMLST tree in minutes
No registration required • Your data stays secure & private
No credit card required • Your data stays private & secure
Solu: genomic surveillance in your browser
Ready in Minutes
The tool runs in our optimized high performance cloud, taking usually from seconds to minutes to complete.
Works for Bacteria and Fungi
Solu supports most pathogenic bacterial and fungal organisms.
Easy-to-use Tool
You can use Solu even if you have never analyzed WGS data before thanks to its simple interface.
HIPAA-grade Security
Your uploaded files are protected with the high-level security, so no one can access them except you.
Fully Online
Solu is online which means that you don't need to download anything to your computer or phone.
Supports Short & Long Reads
Solu Platform supports both short- and long-read sequencing data.
How to run cgMLST online?
Looking for a way to run cgMLST without building schemas or installing chewBBACA? Solu Platform runs cgMLST directly in your browser against published, externally curated schemes from BIGSdb-Pasteur, PubMLST and Enterobase, covering 14 species across ten schemes. Upload a nucleotide sequence file (.fasta, .fna, .fa or .gz) or raw reads (.fastq, .fastq.gz) and get an allelic profile in minutes. Add four or more samples of the same species and the platform builds allele-difference clusters and a neighbour-joining tree alongside them.
REQUIREMENTS
WGS data from supported bacterial isolates
Inputs
raw reads (.fastq / fastq.gz), genomes (.fasta)
Outputs
hashed allelic profile, pairwise allele distances, named clusters, neighbour-joining tree
"Working with Solu has been a joy. The software is intuitive and easy to use, and the team is responsive and proactive."
Prof. Paul Bollyky
Stanford