Search the 7,300+ bacterial and fungal species Solu can identify from whole-genome sequencing, and see which species-specific analyses run on top of our universal pipeline.
Type at least three letters. Genus, species or a former name all work.
Every bacterial and fungal sample runs through the same pipeline regardless of species: read quality control, de novo assembly, generic assembly quality assessment, contamination detection, taxonomic species identification, and reference-free phylogeny with single-linkage clustering.
Plasmid reconstruction and typing additionally runs on every bacterial sample. AMR gene detection runs on every bacterial assembly via AMRFinderPlus against the full Reference Gene Catalog. Virulence factor screening runs on every bacterial assembly via ABRicate against the full VFDB.
Species not listed in the table below still run through the universal pipeline — they simply receive no species-specific add-ons.
These analyses are added on top of the universal pipeline. The curated AMR and virulence columns mark where the upstream catalog maintains dedicated species-specific curation — they do not indicate whether detection runs, which it always does for bacteria.